Evolution of microbial RNA polymerase: implications for high-level bacterial phylogeny, domain accretion, and horizontal gene transfer

Jones, D. T., Taylor, W. Roentgen., and you may Thornton, J. Yards. (1992). The quick age bracket regarding mutation investigation matrices regarding healthy protein sequences. Bioinformatics 8, 275–282. doi: /bioinformatics/8.3.275

Jukes, T. H., and you may Cantor, C. R. (1969). “Progression off healthy protein molecules,” in Mammalian Necessary protein Metabolism, Vol. step 3, ed. H. Letter. Munro (Ny, NY: Academic Drive), 21–132.

Kappes, R. Yards., Kempf, B., Kneip, S., Boch, J., Gade, J., Meier-Wagner, J., et al. (1999). Several evolutionarily closely associated ABC transporters mediate the newest consumption away from choline having synthesis of one’s osmoprotectant glycine betaine inside Bacillus subtilis. Mol. Microbiol. thirty-two, 203–216. doi: /j.1365-4.x

Kassem, I. We., Khatri, Meters., Esseili, Yards. An excellent., Sanad, Y. M., Saif, Y. Meters., Olson, J. W., ainsi que al. (2012). Breathing necessary protein lead differentially to Campylobacter jejuni’s endurance as well as in vitro telecommunications with hosts’ intestinal tissue. BMC Microbiol. . doi: -2180-12-258

Katoh, K., Misawa, K., Kuma, K., and you can Miyata, T. (2002). MAFFT: a manuscript way for quick numerous succession positioning considering fast Fourier changes. Nucleic Acids Res. 30, 3059–3066. doi: /nar/gkf436

Katoh, K., and Standley, D. Meters. (2013). MAFFT several succession positioning application adaptation eight: improvements within the performance and function. Mol. Biol. Evol. 30, 772–780. doi: /molbev/mst010

Klenk, H

Kern, M., Klotz, Yards. Grams., and you can Simon, J. (2011a). The new Wolinella succinogenes mcc gene class encodes an unusual breathing sulphite prevention system. Mol. Microbiol. 82, 1515–1530. doi: /j.13six5-six.x

Kern, Meters., Volz, J., and Simon, J. (2011b). The oxidative and you will nitrosative stress protection network off Wolinella succinogenes: Cytochrome c nitrite reductase mediates the stress response to nitrite, nitric oxide, hydroxylamine and you will hydrogen peroxide. Environ. Microbiol. thirteen, 2478–2494. doi: /j.1462-0.x

Kern, Yards., and you may Simon, J. (2009). Electron transport chains and you can bioenergetics out of respiratory nitrogen metabolic process into meetme Inloggen the Wolinella succinogenes or other Epsilonproteobacteria. Biochim. Biophys. Acta 1787, 646–656. doi: /j.bbabio.

Kersters, K., De- Vos, P., Gillis, Yards., Swings, J., Vandamme, P., and you may Stakebrandt, E. (2006). Inclusion to your Proteobacteria. New york, NY: Springer. doi: /0-387-30745-step 1-step one

Kimura, Yards. (1980). A good way to possess quoting evolutionary cost from feet substitutions using relative knowledge from nucleotide sequences. J. Mol. Evol. 16, 111–120. doi: /BF01731581

P., Meier, T. D., Durovic, P., Schwass, V., Lottspeich, F., Dennis, P. P., ainsi que al. (1999). RNA polymerase of Aquifex pyrophilus: implications on the evolution of one’s bacterial rpoBC operon and incredibly thermophilic micro-organisms. J. Mol. Evol. forty-eight, 528–541. doi: /PL00006496

Klotz, M. Grams., and you will Stein, L. Y. (2008). Nitrifier genomics and you may progression of the nitrogen period. FEMS Microbiol. Lett. 278, 146–156. doi: /j.1574-0.x

Konstantinidis, K. T., and you will Tiedje, J. M. (2005). For the a great genome-situated taxonomy to own prokaryotes. J. Bacteriol. 187, 6258–6264. doi: /JB.-

Kozlowski, J. A., Stieglmeier, Meters., Schleper, C., Klotz, M. Grams., and Stein, L. Y. (2016). Routes and you will secret intermediates needed for obligate cardiovascular ammonia-based chemolithotrophy when you look at the micro-organisms and you will Thau.2

R. Krieg, J

Kozubal, Yards. A good., Romine, Meters., Jennings, Roentgen. D., Jay, Z. J., Tringe, S. G., Rusch, D. B., ainsi que al. (2013). Geoarchaeota: a separate candidate phylum about Archaea of large-temperatures acid iron mats in the Yellowstone Federal Park. ISME J. eight, 622–634. doi: /ismej.

Kuever, J., Rainey, F. Good., and you can Widdel, F. (2006a). “Family unit members We. Desulfurellaceae fam. the fall of,” inside Bergey’s Manual from Scientific Bacteriology, (The latest Proteobacteria), Part C (This new Leader-, Beta-, Delta-, and you can Epsilonproteobacteria), Vol. dos, second Edn. eds D. J. Brenner, Letter. T. Staley, and you can G. Meters. Garrity (New york, NY: Springer), 923.

Kuever, J., Rainey, F. Good., and you will Widdel, F. (2006b). “Order We. Desulfurellales ord. nov,” inside the Bergey’s Instructions regarding Medical Bacteriology, (The new Proteobacteria), area C (The Leader-, Beta-, Delta-, and you may Epsilonproteobacteria)2, Vol. dos, second Edn. eds D. J. Brenner, Letter. T. Staley, and you may G. Meters. Garrity (Nyc, NY: Springer), 922.